【問題】Samtools sort ?推薦回答

關於「Samtools sort」標籤,搜尋引擎有相關的訊息討論:

samtools-sort(1) manual page。

2021年7月7日 · Note that if the sorted output file is to be indexed with samtools index, the default coordinate sort must be used. Thus the -n and -t options ...: 。

samtools(1) manual page。

2021年7月7日 · samtools sort -T /tmp/aln.sorted -o aln.sorted.bam aln.bam ... Index a coordinate-sorted SAM, BAM or CRAM file for fast random access.: 。

samtools sort: legacy usage - BioStars。

edit: As you are using SAMtools 1.1, you should use the "current" command line, not the "legacy": samtools sort -@ 12 -o in_sort.bam in.bam. end of edit:.samtools sorting and indexing - Biostarssamtools sort bam file - Biostarssamtools sort- no output file generated - Biostarshow to use samtools sort correctly? - Biostarswww.biostars.org 的其他相關資訊: tw | tw。

Heng Li on Twitter: "Command line to remap a position sorted bam ...。

2019年5月26日 · samtools collate -uOn128 old-pos-srt.bam tmpxyz | samtools fastq - | bwa mem -pt16 ref.fa - | samtools sort --threads=4 -m4G - - | tee ...: 。

Converting SAM to BAM with samtools “view” - Quinlan Lab。

2013年11月20日 · samtools “index”. Indexing a genome sorted BAM file allows one to quickly extract alignments overlapping particular genomic regions. Moreover, ...: 。

[PDF] Opening up complex data analysis methods with the CWL standards。

2017年10月23日 · https://goo.gl/55pd52 ... Twitter: https://twitter.com/reanahub ... “samtools sort” and tag it as being BAM formatted.。

4 Week 3- What is a Genetic Variant? | Marine Genomics: Mapping ...。

*The programs that we are installing + samtools: allows us to filter and view our ... samtools view -bhS ${base}.sam | samtools sort -o ${base}.bam done ...。

Dave's Wiki | SAMTools。

Sorting a BAM file. Always sort your BAM files; many downstream programs only take sorted BAM files. samtools.: 。

[PDF] WashU Epigenome Browser Documentation。

Bed like format track files need be sorted before submission. For example, if we have a track file named ... Using samtools sort to coordinate sort the file.。

圖片全部顯示


常見Samtools sort問答


延伸文章資訊