【問題】STAR aligner ?推薦回答
關於「STAR aligner」標籤,搜尋引擎有相關的訊息討論:
(PDF) STAR: ultrafast universal RNA-seq aligner - ResearchGate。
In contrast to these approaches, STAR. was designed to align the non-contiguous sequences directly to. the reference genome. STAR algorithm consists of two ...。
alexdobin/STAR: RNA-seq aligner - GitHub。
RNA-seq aligner. Contribute to alexdobin/STAR development by creating an account on GitHub.: 。
STAR: ultrafast universal RNA-seq aligner - NCBI。
Results: To align our large (>80 billon reads) ENCODE Transcriptome RNA-seq dataset, we developed the Spliced Transcripts Alignment to a Reference (STAR) ...: 。
Alignment and mapping methodology influence transcript ...。
2020年9月7日 · We chose STAR, in particular, since it has the ability to project the aligned reads to transcriptomic coordinates, which allowed us to use a ...。
TopHat2: accurate alignment of transcriptomes - Genome Biology。
2013年4月25日 · The number of spliced-read alignments from TopHat2, GSNAP, RUM, MapSplice, and STAR. The RNA-seq reads are from Chen et al.[11]. TopHat2, GSNAP, ...。
[PDF] STAR manual 2.7.0a。
2019年1月23日 · STAR will output a non-chimeric alignment into Aligned.out.sam with soft-clipping a portion of the read. If this portion is long enough, ...: 。
Scavenger: A pipeline for recovery of unaligned reads utilising ...。
2018年11月26日 · Scavenger first aligns sequencing reads against the reference genome using the STAR alignment tool in the source execution step.。
accurate and repeat tolerant realignment of RNA-seq reads。
We chose Tophat2 because of its popularity as one of the first RNA-seq alignment tools and STAR for its use within the ENCODE project, its high accuracy and ...。
HSRA: Hadoop-based spliced read aligner for RNA sequencing data。
2018年7月31日 · Considering only open-source tools, state-of-the-art aligners that were evaluated include GSNAP [24], STAR [25], SOAPSplice [26], MapSplice [27] ...。
Challenges and solutions for analysing dual RNA‐seq data for non ...。
2018年12月14日 · While STAR and NextGenMap achieved a high mapping rate of pathogen reads, both aligners also mismapped host reads to the genome of the target ...
常見STAR aligner問答
延伸文章資訊As far as I know, STAR doesn't run under Windows 10. Would you consider another aligner? Rsubread...
STAR aligner. Spliced Transcripts Alignment to a Reference is a fast RNA-seq read mapper, with su...
STAR will output a non-chimeric alignment into Aligned.out.sam with soft-clipping a portion of th...
Spliced Transcripts Alignment to a Reference (STAR) is a fast RNA-seq read mapper, with support f...
STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome...
As far as I know, STAR doesn't run under Windows 10. Would you consider another aligner? Rsubread...
STAR aligner. Spliced Transcripts Alignment to a Reference is a fast RNA-seq read mapper, with su...
STAR will output a non-chimeric alignment into Aligned.out.sam with soft-clipping a portion of th...
Spliced Transcripts Alignment to a Reference (STAR) is a fast RNA-seq read mapper, with support f...
STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome...