關於「HISAT2」標籤，搜尋引擎有相關的訊息討論：

Graph-based genome alignment and genotyping with HISAT2 and ...。

We apply HISAT2 for HLA typing and DNA fingerprinting; both applications form part of the HISAT-genotype software that enables analysis of haplotype-resolved ...： tw | tw。

Gaining comprehensive biological insight into the transcriptome by ...。

2017年7月5日 · The six top genes found by StringTie-HISAT2 in this list were TDGF1, CRABP1, SFRP2, GJA1, GAL, and LIN28A with functional roles in various ...。

Comparison of Burrows-Wheeler Transform-Based Mapping ... - NCBI。

2018年2月26日 · To our knowledge, this is the first evaluation of HISAT2 applied to ... Snelling W. M., Bennett G. L., Keele J. W., Kuehn L. A., ...： tw | tw。

(PDF) HISAT: A fast spliced aligner with low memory requirements。

2015年3月9日 · PDF | HISAT (hierarchical indexing for spliced alignment of transcripts) is ... For reads with shorter anchors (1–7 bp), the two-pass algo-.。

Running HISAT - Galaxy | Migale。

HISAT2 A fast and sensitive alignment program (Galaxy Version 2.1.0+galaxy5) ... HISAT outputs alignments in SAM format, enabling interoperation with a ...。

Cloud accelerated alignment and assembly of full-length single-cell ...。

2019年12月30日 · The alignment tool - STAR or HISAT2 - is then executed using ... Fuccillo MV, Földy C, Gökce Ö, Rothwell PE, Sun GL, Malenka RC, Südhof TC.： tw | tw。

[PDF] Web-based bioinformatics workflows for end-to-end RNA-seq data ...。

MapSplice [15], QPALMA [16], STAR [17] and HISAT [18] ... Li R, Yu C, Li Y, Lam TW, Yiu SM, Kristiansen K, Wang J. SOAP2: an improved.。

Experimental and Bioinformatic upgrade for genome-wide mapping ...。

2021年7月3日 · Moreover, the performance of two aligners, Bowtie2 and HISAT2 was tested ... (LIT) medium (5 g.l-1 liver infusion, 5 g.l-1 bacto-tryptose, ...。

A CLEAR pipeline for direct comparison of circular and linear RNA ...。

2019年6月12日 · HISAT2-unmapped fragments were then mapped to the same ... Huang, Y., Savich, G.L., He, X., Mieczkowski, P., Grimm, S.A., Perou, C.M. et al.。

CircRNAwrap – a flexible pipeline for circRNA ... - FEBS Press。

2019年5月4日 · Share on. Email; Facebook; Twitter; Linked In; Reddit; Wechat ... Linear reads were analyzed with the hisat2-stringtie method [37].